Using syngeneic mouse tumor models, we investigated how electrochemotherapy reshapes the tumor microenvironment and influences anti-tumor immune responses. In addition, I shared my expertise in electrochemotherapy and provided practical training on the implementation of electrochemotherapy protocols.

This exchange facilitated bidirectional knowledge transfer, strengthened the collaboration between IPBS Toulouse and the Institute of Oncology Ljubljana, and created new opportunities for future joint research projects.

During my two-month STSM at IPBS Toulouse, I gained hands-on experience in spectral flow cytometry and intravital microscopy for studying immune responses following electrochemotherapy.

Using syngeneic mouse tumor models, we investigated how electrochemotherapy reshapes the tumor microenvironment and influences anti-tumor immune responses. In addition, I shared my expertise in electrochemotherapy and provided practical training on the implementation of electrochemotherapy protocols.

This exchange facilitated bidirectional knowledge transfer, strengthened the collaboration between IPBS Toulouse and the Institute of Oncology Ljubljana, and created new opportunities for future joint research projects.

Conference venue: Queen Elizabeth II Centre in London, United Kingdom. Conference start and end date: 10/12/2025 to 12/12/2025

Title of the presentation: Blocking Dopamine D2 Receptors Induces Anti-Cancer and Immune Stimulatory Effects in Ex Vivo Patient-Derived Tumour Slice Models of Ovarian Cancer

Type of the presentation: poster

Co-authors: Maria Edwards, Pablo Caruana, Mireia Escar, Jose Luis Corchero, Maria Virtudes Céspedes Other details of the presentation: Presented during the Poster Sesion

Outcome of the conference participation: The congress advanced my academic growth and scientific network greatly. The sessions were excellent, covering the latest findings in immunotherapy approaches, such as CTLA-4/PD-1 blockades, novel bispecific and tri-specific modalities, CAR-T therapy and cancer vaccines.

The opportunity to present my work was also hugely beneficial; multiple ambassadors from industry were very interested in my work, particularly the use of ex vivo tumour slices for drug discovery, and through these interactions I made new contacts. I also had the opportunity to speak to other students who were utilising similar scientific techniques, and we were able to share our knowledge and experience with one another.I am very grateful to COST Action and Immuno-model for their generous support which has allowed me to learn more deeply about immunotherapies, share my knowledge and work on novel immunological models, and further connect with the international scientific community

I am Norbert Nass, investigator at Brandenburg Medical School (MHB), Institute of Pathology in Brandenburg / Havel, Germany. Our major research topic is biomarker development for the prediction of therapy success, mostly for gynecological cancers. In this short-term scientific mission in Daniela Costea´s laboratory in Bergen (Norway), I had the opportunity to get trained in the establishment of organotypic models (3D-OTC) for squamous cell carcinomas of head and neck or vulva and cervix. The learnt techniques will be transferred to our laboratory and will enable us to develop more physiologically relevant models to understand the interaction of tumor cells with the cells of their microenvironment. The established contacts to Daniela´s group and the researchers of the Center for Biomarker Research of Bergen will help us in the establishment of collaborative research projects with the members of the Immuno-Model COST-action and beyond. I really enjoyed the stay and thank the members of the host laboratory and the COST action for this opportunity.

Start and end date: 16/02/2026 to 17/04/2026

I am Ana Margarida Carvalho, a PhD student at i3S – Instituto de Investigação e Inovação em Saúde, and ICBAS Instituto de Ciências Biomédicas Abel Salazar (Universidade do Porto, Portugal), where I am working on an immune-competent in vitro model of chronic liver disease based on biomaterials and hepatic cells. Through a Short-Term Scientific Mission from the IMMUNO-model COST action, I joined the University Medical Center Groningen (the Netherlands) to work with patient-derived human liver organoids aiming at increasing the physiological relevance of my in vitro disease model. It was an extraordinary opportunity, both on personal and professional levels! I am very grateful to the IMMUNO-model COST action for supporting this research stay.

LinkedIn: www.linkedin.com/in/margaridafcarv
X: @margaridafcarv

Figures and tables of some experimental results were presented in the STSM scientific report.

The experimental protocols used in this STSM have been previously published [1,2]; no new protocols were developed during the course of this STSM. Nevertheless, if required by the Grant Awarding Coordinator, I may submit the protocols for the IMMUNO-model Knowledge Hub.

References:
[1] Broutier, L., et al., Culture and establishment of self-renewing human and mouse adult liver and pancreas 3D organoids and their genetic manipulation. Nature Protocols, 2016. 11(9): p. 1724–1743.
[2] Huch, M., et al., Long-Term Culture of Genome-Stable Bipotent Stem Cells from Adult Human Liver. Cell, 2015. 160(1): p. 299–312.

The applicant established connections with Dr. Tyler Jacks (MIT, USA, CRISPR-Cas9 technology) for cancer immunotherapies and The Mimetics (Netherlands, startup with 3D culture cancer models). The attendance at the EACR Conference was a crucial step in advancing her career and expertise in cancer immunotherapy and had a positive impact on the IMMUNO-model COST Action by increasing its visibility.

Contribution details

Title of the presentation: Treatment of colon cancer cells with Lacticaseibacillus casei: induction of apoptosis and release of DAMPs associated with immunogenic cell death
Type of the presentation: Poster

Outcome of the conference participation

My participation in the 21st Meeting of the Association for Cancer Immunotherapy was a significant contribution to the development of my scientific career. During its course, my PI Prof. Katerina Chlichlia, who was also in attendance and I had the opportunity to witness the advancement being made in various fields of immunotherapy and the innovative research conducted towards the understanding and development of immunotherapeutic regimens. In addition, our work, presented as a poster in the Meeting during the session Improving Immunity, gained the attention of various participants who showed a keen interest in the bioactive properties of the probiotic strain utilized in our lab.  Each one of them, according to their expertise, was able to offer their insight and critique on our research which is already being evaluated in the context of our work and will, without a doubt prove to be indispensable when designing our future experiments and possible additions in our studies. Furthermore, throughout the Meeting I had the chance to meet and converse with participants from industry and familiarize myself with novel protocols, techniques and cutting-edge, state of the art instruments, capable of greatly enhancing and expanding the scope of the research conducted in our lab. Finally, Prof. Chlichlia and I had the opportunity to establish contacts with other colleagues, from various research institutes, including but not restricted to Dr. Claudia Paret and Prof. Dr. Viktor Umanski and we are now considering the possibilities for future collaborations, either for me individually or our research group as a whole. Overall, my trip to Mainz and my participation in the CIMT Annual Meeting have given me a unique avenue to not only present my work and receive important feedback that will help me greatly in advancing my studies, but also appreciate the innovative ideas explored in the field of immunotherapy and find among the Meeting’s participants researchers and industry scientists for possible future collaborations.

Description of the work carried out during the VM

The Virtual Mobility project focused on creating a Systematic Search Strategy to collect publicly available omics datasets from immuno-oncology experiments. The main goal was to optimize the dataset search and collection process providing easy-to-use guidelines. All the produced material is available at the link on the last page.

The work was organized into different phases, focusing on the establishment of a taskforce and the technical development of the search strategy.

1. Data Gathering Taskforce involvement and first meeting: At the beginning of the VM period, the interested researchers were involved and a Data Gathering Taskforce was established. During the first meeting the taskforce brainstormed on how to proceed in this pilot phase, and the tasks were assigned. All the documents and useful files were organized in a Google Drive shared folder.

2. Pilot Query generation and Data Collection: The query generation process was primarily centralized around the project lead. Two pilot search queries were developed to find transcriptomic datasets related to immunotherapy in breast cancer and adenocarcinoma from the Gene Expression Omnibus (GEO) database. The query results contained a summary of the datasets retrieved such as dataset ID, platform type, and number of samples. They were downloaded in txt files.

3. Conversion to Excel Format: To enhance the usability of the query results, a custom script was developed to convert the txt files into Excel spreadsheets. In these files, each row corresponded to a dataset, and each column represented its features. Additional columns were added for manual curation, such as whether the dataset was derived from bulk RNA-seq or single-cell RNA-seq, and whether the study was clinical or preclinical.

4. Pilot query results curation: The taskforce played a crucial role in the pilot manual curation of the query results. Some taskforce members downloaded a copy of the Excel file and independently reviewed the datasets found. Based on researcher’s expertise, datasets were selected or excluded using a checkbox.

5. Concordance and Similarity Analysis: After the query results curation process was completed, an analysis was carried out to evaluate the concordance between the selected datasets to define the selection criteria. Furthermore, the similarity of the dataset annotation collected by the researchers was evaluated. The goal was to assess how consistently datasets were evaluated and to identify any discrepancies or challenges in the manual curation process. This analysis was critical in highlighting potential issues with manual data selection and will inform on the development of guidelines to enhance curation accuracy.

6. Keywords and research boundaries: The taskforce members compiled a further Excel file which defines the research boundaries, underlining new fields and terms of interest and helping in the definition of selection criteria.

7. Second meeting and report writing: During the second meeting the taskforce brainstormed on the query results curation experience, discussing on the reported concordance and similarity and research boundaries. The feedback was collected in a report that will be key to establish future guidelines on the query results curation process.

Description of the VM main achievements and planned follow-up activities

The Virtual Mobility Grant led to several important achievements:

1. Systematic search strategy development: a pilot version of the systematic search strategy was developed, focusing on the optimization of search queries in GEO for RNA-sequencing datasets. The custom script to convert txt files into Excel files significantly streamlined the data processing and annotation workflow.

2. Query results curation principles: the taskforce played a central role in manually curating the query results and deciding on dataset inclusion or exclusion based on researcher’s expertise. The manual curation process proved essential in highlighting challenges and inconsistencies that can occur in dataset selection, providing a foundation for improving future selection criteria and guidelines.

3. Documentation and future refinements: comprehensive documentation of the query structure, dataset curation and analysis results were produced. This documentation will be useful to define guideline for future expansion of the project to include other data types.

Contribution to Action objective and deliverables:

1. Knowledge sharing channels: the establishment of the Data Gathering Taskforce is fostering the collaboration between researchers and facilitate the transferability of knowledge between basic, translational and clinical investigators. In particular, it will generate a data resource available for everyone in the Action and for the broader cancer community upon publication.

2. Dataset collection, processing and biobanking protocols: the documentation produced will be fundamental for the establishment of dataset collection and curation guidelines. It will lay the basis of robust protocols that can be followed to collect molecular data from clinical and preclinical samples that represent an important resource to accelerate the study of immunotherapy efficacy and toxicity and validate biomarkers to monitor these effects.

Several activities are planned to further develop and expand the project:

1. Expansion to other tumour types and treatments: the next phase will involve expanding the search strategy to include additional tumour types and other treatments by the generation of new queries.

2. Refinement of selection criteria: the insights gained from the concordance analysis of the manual curation process will inform the development of refined selection criteria for datasets and guidelines for the curation process. These criteria will help to reduce inconsistencies.

3. Ongoing taskforce collaboration: the data gathering taskforce will continue to provide feedback on the project’s progress and collaborate on refining the search strategy and curation methods. Regular online meetings will be maintained to ensure continuous knowledge sharing and collaboration.